From: FMLRC: Hybrid long read error correction using an FM-index
Dataset | Method | # contigs | N50 | Genome fraction | Error rate |
---|---|---|---|---|---|
E. coli K12 | Canu + Miniasm | 1 | 4631922 | 99.832 | 0.00444 |
Genome: 5Mb | CoLoRMap + Miniasm | 1 | 4723063 | 84.485 | 0.02322 |
Pacbio: 450Mb | FMLRC + Miniasm | 1 | 4646838 | 99.757 | 0.00029 |
Illumina: 3.4Gb | Jabba + Miniasm | 76 | 72751 | 92.923 | 0.00005 |
LoRDEC + Miniasm | 1 | 4688727 | 97.504 | 0.00321 | |
LoRMA + Miniasm | 107 | 64214 | 89.871 | 0.00099 | |
Sprai + Miniasm | 1 | 4639974 | 99.989 | 0.00092 | |
Miniasm | 1 | 4783415 | 0.002 | 0.01333 | |
Canu | 2 | 4656585 | 99.998 | 0.00012 | |
hybridSPAdes | 2 | 4469733 | 99.967 | 0.0001078 | |
DBG2OLC | 2 | 4585967 | 98.210 | 0.00225 | |
Cerulean | 16 | 1258842 | 98.959 | 0.09500 | |
S. cerevisiae W303 | Canu + Miniasm | 36 | 729798 | 89.739 | 0.00521 |
Genome: 12Mb | CoLoRMap + Miniasm | 23 | 766539 | 83.464 | 0.00761 |
Pacbio: 1.3Gb | FMLRC + Miniasm | 32 | 771324 | 87.717 | 0.00175 |
Illumina: 18Gb | Jabba + Miniasm | 186 | 62337 | 72.239 | 0.00008 |
LoRDEC + Miniasm | 61 | 597849 | 85.563 | 0.00941 | |
LoRMA + Miniasm | 292 | 49850 | 74.632 | 0.00103 | |
Sprai + Miniasm | 39 | 561985 | 88.697 | 0.00193 | |
Miniasm | 29 | 566484 | 0.009 | 0.03738 | |
Canu | 26 | 777664 | 90.955 | 0.00068 | |
hybridSPAdes | 229 | 568823 | 87.303 | 0.00899 | |
DBG2OLC | 32 | 530806 | 0.067 | 0.03407 | |
Cerulean | 78 | 466556 | 0.03687 | ||
A. thaliana Ler-0 | Canu + Miniasm | 2100 | 74153 | 81.844 | 0.01410 |
Genome: 120Mb | CoLoRMap + Miniasm | 963 | 404022 | 60.225 | 0.01853 |
Pacbio: 11Gb | FMLRC + Miniasm | 1923 | 57751 | 67.275 | 0.00401 |
Illumina: 13Gb | Jabba + Miniasm | 1632 | 57307 | 62.796 | 0.00041 |
LoRDEC + Miniasm | 2232 | 30229 | 43.088 | 0.01107 | |
LoRMA + Miniasm | 34 | 26316 | 0.361 | 0.00448 | |
Sprai + Miniasm | 1475 | 169744 | 91.070 | 0.00824 | |
Miniasm | 740 | 615512 | 0.003 | 0.03409 | |
Canu | 419 | 835253 | 96.123 | 0.00760 | |
DBG2OLC | 440 | 754404 | 87.477 | 0.00388 |