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Fig. 3 | BMC Bioinformatics

Fig. 3

From: CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses

Fig. 3

Automating filtering of genes to CEMiTool. The effect of the filter p-value threshold on the enrichment of modules was tested by running CEMiTool on 300 studies. a The combined enrichment score (CES, see Additional file 1: Text) of the resultant modules for each study and for each filter p-value was calculated using Reactome Pathways as gene sets. The black line represents the mean CES of all 300 studies, while the green shaded area represents the 95% confidence interval from the mean. b The number of genes selected for CEMiTool for each filter p-value. The black line represents the mean number of all 300 studies, and the green shaded area represents the 95% confidence interval from the mean

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