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Table 11 Correlation analysis for the variable importances of the common top 100 SNPs identified by T-Trees and the hybrid FLTM / T-Trees approach

From: A method combining a random forest-based technique with the modeling of linkage disequilibrium through latent variables, to run multilocus genome-wide association studies

Pathology

Chromosome

Number of common

Correlation

  

top 100 SNPs

coefficient

BD

Chr03

47

0.99305

 

Chr21

43

0.87334

CAD

Chr05

36

0.99160

 

Chr06

42

0.81184

CD

Chr01

42

0.99484

 

Chr20

25

0.94999

HT

Chr10

55

0.98335

 

Chr14

51

0.58097

RA

Chr06

35

0.93001

 

Chr19

32

0.99948

T1D

Chr02

38

0.73068

 

Chr13

40

0.97849

T2D

Chr10

60

0.70314

 

Chr21

37

0.69802

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BMC Bioinformatics

ISSN: 1471-2105

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