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Table 1 A brief of the 113 microarrays used as the deconvolution dataset

From: A gene profiling deconvolution approach to estimating immune cell composition from complex tissues

Major leukocyte types

Subtypes

Number of replicates

 

B cells

B cells naïve

7

*

B cells memory

8

*

PCs

Plasma cells

7

 

CD8 T cells

T cells CD8

4

*

CD4 T cells

T cells CD4 naïve

3

*

T cells CD4 memory resting

3

*

T cells CD4 memory activated

3

*

T cells follicular helper

3

 

T cells regulatory (Tregs)

2

 

Gamma delta T cells

T cells gamma delta

2

*

NK cells

NK cells resting

4

**

NK cells activated

11

**

Monocytes and Macrophages

Monocytes

11

*

Macrophages M0

12

 

Macrophages M1

3

 

Macrophages M2

3

 

Dendritic cells

Dendritic cells resting

6

 

Dendritic cells activated

6

 

Mast cells

Mast cells resting

2

 

Mast cells activated

2

 

Eos

Eosinophils

2

 

PMNs

Neutrophils

8

 
  1. Remarks: * and ** are cell types that used in the validation datasets (PBMC from 20 adults). Both activated and resting NK cells are counted as NK cells in the prediction on the benchmark experiment
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BMC Bioinformatics

ISSN: 1471-2105

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