Table 1 Comparison with other PPI prediction databases
PrePPI [16] | HOMCOS [17] | PRISM [28] | Interactome3D [29] | MEGADOCK-Web | |
|---|---|---|---|---|---|
Number of PPI predictions | 1,350,000 | – | 30,475 | 227,815 | 28,331,628 |
Comprehensive PPI prediction | ✓ | ||||
Search a single protein query | ✓ | ✓ | ✓ | ✓ | |
Search a pair protein query | ✓ | ✓ | ✓ | ✓ | ✓ |
Viewing of multiple modeled complex structures | ✓ | ✓ | ✓ | ✓ | |
Mapping biochemical pathways | ✓ | ✓ | |||
Template-free PPI prediction | ✓ |