Table 1 Summary statistics for six sequences, with and without shape
Sequence | Length | Clusters | Entropy | Conditional entropy | Mean error |
|---|---|---|---|---|---|
Without SHAPE data | |||||
 Riboswitch | 71 | 3 | 25.3533 | 13.3428 | 5.5875 |
 5s rRNA | 120 | 4 | 51.293 | 30.8405 | 53.3667 |
 P546 | 155 | 7 | 114.5027 | 54.0569 | 44.1121 |
 RNase P | 154 | 8 | 86.7581 | 39.7549 | 36.8573 |
 HCV | 95 | 5 | 37.893 | 11.3547 | 19.7718 |
 tRNA (Phe) | 76 | 4 | 52.1349 | 17.404 | 20.474 |
With SHAPE data | |||||
 Riboswitch | 71 | 1 | 4.9419 | 4.9419 | 1.1114 |
 5s rRNA | 120 | 3 | 21.376 | 11.5638 | 10.1141 |
 P546 | 155 | 3 | 28.1101 | 16.4472 | 7.1615 |
 RNase P | 154 | 3 | 20.3484 | 11.4831 | 20.9432 |
 HCV | 95 | 2 | 18.6929 | 1.7029 | 6.4995 |
 tRNA (Phe) | 76 | 1 | 3.0043 | 3.0043 | 0.5634 |