Table 3 Manually generated dictionary used to distinguish relevant (PPI + ive) and irrelevant (PPI-ive) information on protein-protein binding sites. Only lemmas (stem words) are shown
From: Natural language processing in text mining for structural modeling of protein complexes
Category | Words |
|---|---|
PPI + ive | bind, interfac, complex, hydrophob, recept, ligand, contact, recog, dock, groove, pocket, pouch, interact, crystal, latch, catal |
PPi–ive | deamidation, IgM, IgG, dissociat, antibo, alloster, phosphory, nucleotide, polar, dCTP, dATP, dTTP, dUTP, dGTP, IgG1, IgG2, IgG3, IgG4, Fc, ubiquitin, neddylat, sumoyla, glycosylation, lipidation, carbonylation, nitrosylation, epitope, paratope, purine, pyrimidine, isomeriz, non-conserved, fucosylated, nonfucosylated, sialylation, galactosylation |