Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing

BMC Bioinformatics

Table 4 All clusters matching with the three largest Pfam clusters from data set #4. coreClust breaks down Pfam clusters into smaller clusters with zero to a few outliers

Pfam Family	\|Pfam\|	\|coreCl\|	\(\frac {\|Pfam \cap coreCl\|}{\|Pfam\|}\)	\(\frac {\|Pfam \cap coreCl\|}{\|coreCl\|}\)	Total
					clustered
					sequences
PF03880.12	1232	84	0.07	1	341
		54	0.04	1
		44	0.03	1
		27	0.02	1
		24	0.02	1
		17	0.01	1
		15	0.01	1
		15	0.01	1
		14	0.01	1
		13	0.01	1
		13	0.01	1
		11	0.01	1
		10	0.01	1
PF00271.28	1192	364	0.30	1	1084
		343	0.29	1
		253	0.21	1
		91	0.08	1
		22	0.02	1
		11	0.01	0.91
PF00270.26	1187	260	0.22	1	1031
		245	0.21	1
		196	0.16	1
		141	0.12	1
		105	0.09	1
		72	0.06	1
		12	0.01	1

ISSN: 1471-2105