Table 1 Index construction times (C-Time) and index sizes for hg19
From: Fast and efficient short read mapping based on a succinct hash index
Mappers | C-Time | C-Time | index size |
|---|---|---|---|
1 thread (s) | 32 threads (s) | ||
FEM (l step =2) | 202.7 | 52.9 | 5.3 GB |
FEM (l step =3) | 133.6 | 28.1 | 3.5 GB |
Hobbes3 | 558.6 | 249.9 | 11 GB |
Bitmapper | 627.6 | - | 15 GB |
Bitmapper2 | 519.8 | - | 4.9 GB |