Table 3 Results for mapping 5 million real reads of length 150 bps to the hg19 (ED 4)
From: Fast and efficient short read mapping based on a succinct hash index
Mappers | 1-thread time | 8-thread time | 16-thread time | 32-thread time | Mapped reads |
|---|---|---|---|---|---|
(s) | (s) | (s) | (s) | (#) | |
FEM-vl | 1370 | 195 | 101 | 78 | 4615727 |
FEM-g | 1224 | 176 | 91 | 71 | 4615701 |
Hobbes3 | 2965 | 405 | 213 | 171 | 4615730 |
Bitmapper | 1123 | 137 | 83 | 82 | 4615730 |
Bitmapper2 | 3405 | 467 | 250 | 232 | 4615829 |
Masai | 6556 | - | - | - | 4615694 |