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Table 1 Normalization methods for Illumina 450K array data

From: A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip

Method

Object

R Package

Ref.

SQN

MethyLumiSet

wateRmelon

[8, 11]

SWAN

RGChannelSet

minfi,wateRmelon

[11, 12]

Dasen

MethylSet

wateRmelon

[11]

BMIQ

β-value, MethylSet

ENmix

[9, 13]

RCP

MethylSet

ENmix

[13]

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BMC Bioinformatics

ISSN: 1471-2105

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