Table 2 Mean AUPRC (and standard deviation) on ChIP-seq data
From: Comparison of discriminative motif optimization using matrix and DNA shape-based models
Algorithm | Training | Testing |
|---|---|---|
JASPAR | 0.812 (0.132) | 0.812 (0.132) |
DAMO | 0.834 (0.119) | 0.832 (0.120) |
DAMO_PFM | 0.825 (0.120) | 0.824 (0.122) |
DAMO_dinuc | 0.844 (0.114) | 0.839 (0.119) |
DNAshapedTFBS_4bit | 0.854 (0.105) | 0.842 (0.115) |
DNAshapedTFBS_4bit + shape | 0.875 (0.090) | 0.845 (0.113) |
Shape_only | 0.871 (0.089) | 0.840 (0.112) |
JASPAR + shape | 0.878 (0.089) | 0.846 (0.112) |
DAMO + shape | 0.879 (0.090) | 0.846 (0.113) |