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Table 2 Correlation between compound ranks from structure-based virtual screening. Vina and rDock were employed to screen a library of FDA-approved drugs against target sites in the TOUGH-M1 dataset. Average Spearman’s ρ rank correlation coefficient ±standard deviation values are reported. Positive and Negative sets correspond to pairs of TOUGH-M1 proteins binding similar and dissimilar molecules, respectively. For comparison, we include Spearman’s ρ between binding affinities calculated against each target by ligand docking algorithms, and the molecular weight and random numbers assigned to screening compounds

From: Comparative assessment of strategies to identify similar ligand-binding pockets in proteins

Comparison

Vina

rDock

Positive set

0.71 ±0.16

0.56 ±0.06

Negative set

0.67 ±0.21

0.49 ±0.12

Molecular weight

0.54 ±0.27

0.28 ±0.23

Random

0.00 ±0.01

0.00 ±0.02