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Table 3 The averaged ranking based on predictions. We tested the performance of the algorithm by using the essential ions. The test dataset is composed of the structures that are not used in the statistics of ion distributions. The averaged ranks and their standard deviations are summarized. The two best predicted ionic types (Ca2+ and Zn2+) and the worst case (Mg2+) are highlighted in boldface

From: IDPM: an online database for ion distribution in protein molecules

Ion

Average rank

Standard deviation

Br

2.78

1.93

Ca 2+

1.70

1.58

Cl

3.16

1.66

Cu2+

2.88

2.23

Fe2+/3+

4.26

2.16

K+

2.86

1.83

Mg 2+

10.24

1.21

Mn2+

4.59

3.03

Na+

5.73

1.62

Ni2+

3.37

2.31

Zn 2+

1.81

1.72