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Fig. 1 | BMC Bioinformatics

Fig. 1

From: GROOLS: reactive graph reasoning for genome annotation through biological processes

Fig. 1

Illustration of the GROOLS conceptual graph model. This figure gives an example of a combination of entities and relations defined in the GROOLS model. The model is made of two types of concepts (rectangle nodes): Prior Knowledge (labelled PK) and Observation (labelled O). Relations between concepts are represented by edges named PK-PK (between two PK concepts) or O-PK (between O and PK concepts). Four types of relations are available in the model (i.e. ’subtype’, ’part’, ’expectation’ and ’prediction’) and are labelled with the ’-of’ suffix or the ’has-’ prefix according to the edge direction. This generic model is used to represent any biological processes as a conceptual graph with different combinations of concepts and relations

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