Skip to main content

Table 2 Similarity matrix of SNP data for evaluated individuals

From: TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing

  ID1 ID2 ID3 ID4 ID5 ID6 ID7 ID8 ID9 ID10 ID11 ID12 ID13 ID14 ID15
ID1 72 62 69 47 78 61 59 70 59 62 72 52 46 63
ID2 0.62 66 60 51 71 59 46 56 57 60 54 55 51 69
ID3 0.53 0.57 48 54 70 60 56 61 95 62 58 50 51 58
ID4 0.59 0.52 0.41 70 68 51 59 60 53 55 70 55 49 50
ID5 0.41 0.44 0.47 0.60 64 58 61 63 59 52 56 61 41 58
ID6 0.67 0.61 0.60 0.59 0.55 66 64 62 56 57 66 52 45 60
ID7 0.53 0.51 0.52 0.44 0.50 0.57 61 50 62 66 50 64 48 49
ID8 0.51 0.40 0.48 0.51 0.53 0.55 0.53 54 52 54 47 43 43 44
ID9 0.60 0.48 0.53 0.52 0.54 0.53 0.43 0.47 61 67 52 47 48 62
ID10 0.51 0.49 0.82 0.46 0.51 0.48 0.53 0.45 0.53 63 67 53 47 59
ID11 0.53 0.52 0.53 0.47 0.45 0.49 0.57 0.47 0.58 0.54 63 51 62 61
ID12 0.62 0.47 0.50 0.60 0.48 0.57 0.43 0.41 0.45 0.58 0.54 53 42 66
ID13 0.45 0.47 0.43 0.47 0.53 0.45 0.55 0.37 0.41 0.46 0.44 0.46 48 48
ID14 0.40 0.44 0.44 0.42 0.35 0.39 0.41 0.37 0.41 0.41 0.53 0.36 0.41 50
ID15 0.54 0.59 0.50 0.43 0.50 0.52 0.42 0.38 0.53 0.51 0.53 0.57 0.41 0.43
  1. Haplotype similarities of samples ID1-ID15 for each SNP location are represented beneath the diagonal, while the number of SNP haplotypes shared between pairs of samples are above the diagonal