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Table 2 Computing time [s] required for a single inference run on the given regulon

From: Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data

 

SigB

SigR Kallifidas et al.

SigR Kim et al.

Genexpi

26

109

150

TD-Aracne

447

184

446

  1. Time taken to compute a possible regulations for a single regulon. All of the results were averaged across both the runs with the actual regulator profile and the runs with a randomly generated profile. All times in seconds
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BMC Bioinformatics

ISSN: 1471-2105

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