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Table 3 Evaluation results for S. cerevisiae

From: Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data

Transcription factor Genexpi TD-ARACNE
Regulator Random Regulator Random
FKH1 0.30 0.24 0.00 0.14
FKH2 0.37 0.22 0.45 0.08
MCM1 0.33 0.18 0.65 0.20
NDD1 0.42 0.21 0.00 0.00
ACE2 0.40 0.28 0.52 0.33
MBP1 0.13 0.21 0.39 0.05
SWI4 0.23 0.16 0.48 0.10
SWI6 0.10 0.20 0.00 0.04
  1. Results of Genexpi and TD-Aracne on the eukaryotic regulon reconstruction task. The “Regulator” column reports the proportion of predicted regulations by the true regulator, “Random” reports the proportion of predicted regulations by a random profile (averaged over 20 runs)