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Fig. 3 | BMC Bioinformatics

Fig. 3

From: VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis

Fig. 3

a Sample-Sample Clustering Map depicting samples on both axes with the color representative of the correlation between samples. Metadata columns (provided by the user) are annotated along the top. b Sample-Feature (Gene) Hierarchical Clustering Map with samples along the x-axis and genes along the y-axis. Metadata columns (provided by the user) are annotated along the top. c Sample-Feature heatmaps can also be plotted using k-means clustering, with the number of clusters being configured in the input file. d Principal Component Analysis (PCA) plots, with one being output per metasheet column with the coloring corresponding to the metadata within the column. e Scree plot depicting the amount of variance captured within each principal component

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BMC Bioinformatics

ISSN: 1471-2105

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