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Table 1 Comparison of features in VIPER with other RNA-seq pipelines

From: VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis

Features VIPER HppRNA TRAPLINE QuickRNASeq
Quality Control X X X X
SNP Detection X X X X
Fusion Gene Detection X X   
Differential Expression X X X  
Pathway Analysis X   X X
Consolidated Report X    X
Galaxy Based    X  
Dependencies Packaged X X X  
Support New Species X X   
Package Easy Update X    X
Batch Correction X    
Virus Detection X    
Immunology Analysis X