Table 3 Comparison of Fuwa’s callsets on NA12878 WGS data before and after variants in dbSNP are removed
From: A study on fast calling variants from next-generation sequencing data using decision tree
| Â | Â | All | non-dbSNPs |
|---|---|---|---|
Axiom | GT concordance(%) | 99.32 | 100.00 |
Sensitivity(%) | 96.81 | 96.66 | |
Mono Rate(%) | 0.04 | 0.00 | |
Fosmid | Recall(%) | 88.11 | 63.63 |
1KG confident call set | Recall(%) | 95.31 | 88.07 |