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Table 6 Summary of the 24 individuals identified as influential by the RP test applied to the original TNBC data (individuals highlighted in bold are suspect individuals; asterisks refer to individuals identified as influential for both the original TNBC data and after resampling samples or variables)

From: Ensemble outlier detection and gene selection in triple-negative breast cancer data

Individual ER PR HER2 HER2 level HER2 status HER2 Type LOGIT-EN SPLS-DA SGPLS RP p-value q-value Miscl.
     (IHC) (IHC) (FISH)         (%)
TCGA-AC-A2QJ 0.10(-) 0.00(-) 7.35   -   TNBC 13 1 34 442 1.40e-05 0.006 67
TCGA-E9-A22G 0.44(-) 0.02(-) 15.32   +   non-TNBC 6 13 7 546 1.83-05 0.006 33
TCGA-AR-A251 1.57(+) 0.10(-) 14.02 2+ Equiv - non-TNBC 11 5 9 495 1.61e-05 0.006 67
TCGA-AR-A1AJ 1.47(+) 0.07(-) 9.74   -   non-TNBC 2 10 44 880 3.35e-05 0.007 100
TCGA-A2-A3Y0 2.18(+) 0.03(-) 11.34 1+ -   non-TNBC 8 7 22 1232 5.01e-05 0.009 33
TCGA-A2-A3XV 0.02(+) 0.03(-) 137.94 2+ Equiv + non-TNBC 166 2 5 1660 7.09e-05 0.011 33
TCGA-E9-A1ND 1.44(-) 0.05(-) 13.05   +   non-TNBC 5 11 48 2640 1.20e-04 0.016 100
TCGA-EW-A1P1 3.02(-) 2.56(-) 23.64 2+ Equiv - TNBC 16 24 8 3072 1.43e-04 0.016 100
TCGA-E2-A1II 0.14(-) 0.19(+) 10.73 1+ -   non-TNBC 9 21 20 3780 1.80e-04 0.017 33
TCGA-C8-A3M7 4.27(-) 0.76(-) 25.47   -   TNBC 1 28 153 4284 2.06e-04 0.017 100
TCGA-D8-A1JF 1.26(-) 0.11(-) 32.93 1+ -   TNBC 19 109 2 4142 1.99e-04 0.017 0
TCGA-BH-A42U 9.19(-) 1.83(-) 38.37   -   TNBC 7 3 223 4683 2.28e-04 0.018 100
TCGA-LL-A740 0.30(-) 0.12(-) 68.56 2+ Equiv - TNBC 47 125 1 5875 2.91e-04 0.021 0
TCGA-A2-A1G6 23.90(-) 21.45(-) 29.74 1+ -   TNBC 10 4 204 8160 4.14e-04 0.025 100
TCGA-OL-A5S0 0.09(+) 0.06(-) 31.92    + non-TNBC 46 8 21 7728 3.91e-04 0.026 67
TCGA-A2-A0EQ 2.13(-) 0.04(-) 30.15 3+ + - TNBC 4 12 216 10368 5.33e-04 0.031 67
TCGA-A2-A0YJ 0.09(+) 0.03(-) 240.24 0 -   non-TNBC 27 34 12 11016 5.68e-04 0.031 0
TCGA-AR-A1AH 0.03(+) 0.03(-) 34.12   -   non-TNBC 21 16 38 12768 6.63e-04 0.034 100
TCGA-AC-A62X 0.19(+) 0.02(-) 28.53     non-TNBC 22 35 19 14630 7.63e-04 0.037 0
TCGA-E2-A1LB 0.42(-) 0.09(-) 1129.87 3+ +   non-TNBC 230 6 11 15180 7.93e-04 0.037 33
TCGA-OL-A97C 16.25(-) 8.56(-) 24.04    - TNBC 14 41 30 17220 9.02e-04 0.040 33
TCGA-LL-A5YP 0.16(+) 0.05(-) 15.10 1+ - + non-TNBC 50 22 18 19800 1.04e-03 0.043 100
TCGA-C8-A26X 0.42(-) 0.13(-) 60.12 1+ -   TNBC 53 64 6 20352 1.07e-03 0.043 33
TCGA-D8-A1XW 0.2(-) 0.11(+) 21.03 1+ -   non-TNBC 23 14 68 21896 1.15e-03 0.044 33