Table 3 Residue-level performance of RDb2C constructed with DeepCNF-predicted and DSSP-assigned secondary structure information
From: Identification of residue pairing in interacting β-strands from a predicted residue contact map
Secondary structure | Models | BetaSheet916 | BetaSheet1452 | ||||
|---|---|---|---|---|---|---|---|
Precision | Recall | F1-score | Precision | Recall | F1-score | ||
Predicted | 1st stage | 63.94% | 41.84% | 50.58% | 57.61% | 45.71% | 50.97% |
2nd stage | 65.03% | 55.99% | 60.17% | 64.50% | 58.02% | 61.09% | |
3rd stage | 68.00% | 55.62% | 61.19% | 67.91% | 57.69% | 62.38% | |
DSSP | 1st stage | 69.92% | 49.94% | 58.26% | 62.71% | 54.22% | 58.16% |
2nd stage | 75.79% | 64.00% | 69.40% | 75.74% | 66.07% | 70.58% | |
3rd stage | 76.28% | 65.94% | 70.74% | 76.56% | 67.86% | 71.95% | |