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Table 3 Residue-level performance of RDb2C constructed with DeepCNF-predicted and DSSP-assigned secondary structure information

From: Identification of residue pairing in interacting β-strands from a predicted residue contact map

Secondary structure Models BetaSheet916 BetaSheet1452
Precision Recall F1-score Precision Recall F1-score
Predicted 1st stage 63.94% 41.84% 50.58% 57.61% 45.71% 50.97%
2nd stage 65.03% 55.99% 60.17% 64.50% 58.02% 61.09%
3rd stage 68.00% 55.62% 61.19% 67.91% 57.69% 62.38%
DSSP 1st stage 69.92% 49.94% 58.26% 62.71% 54.22% 58.16%
2nd stage 75.79% 64.00% 69.40% 75.74% 66.07% 70.58%
3rd stage 76.28% 65.94% 70.74% 76.56% 67.86% 71.95%
  1. Performances of the models with the window size of 5 are listed here as the representatives of the first-stage models. Winner in each category is highlighted in bold