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Table 8 Performance of RDb2C at residue level and strand level on the 5-fold cross-validation and shrunk BetaSheet916 set

From: Identification of residue pairing in interacting β-strands from a predicted residue contact map

Level Stage Cross-validation BetaSheet916(858)
F1-score Precision Recall F1-score
Residue Level 1st stage 71.70% 81.02% 71.01% 75.69%
2nd stage 72.18% 79.48% 73.47% 76.36%
3rd stage 71.89% 78.84% 73.67% 76.17%
Strand Level 1st stage 82.28% 93.96% 77.94% 85.20%
2nd stage 86.80% 95.40% 78.61% 86.20%
3rd stage 88.10% 95.59% 77.57% 85.65%
  1. Performances of the models with the window size of 5 are listed here as the representatives of the first-stage models. Winner in each category is highlighted in bold