Fig. 4
From: Identification of missing variants by combining multiple analytic pipelines
Characteristics of the aligner-specific variants. a The chromosome distribution of BWA-unique (red), Novo-unique (green) and shared variants (blue). b The percentage of variants in the LCR, SDR and other regions among BWA-unique, Novo-unique, and shared variants. c The average GC content of BWA-unique (red), Novo-unique (green) and shared variants (blue). d The composition of different functional tiers in BWA-unique (red), Novo-unique (green) and shared variants (blue). Tier 1 includes variants that disrupt the start or stop codon, or cause splicing events; Tier 2 includes variants that cause non-synonymous changes, and Tier3 includes all other types. e The composition of known and novel variants in BWA-unique, Novo-unique and shared variants