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Fig. 2 | BMC Bioinformatics

Fig. 2

From: ClustAGE: a tool for clustering and distribution analysis of bacterial accessory genomic elements

Fig. 2

Example of AGE figure generated by ClustAGE. Top row labeled “*annot*” shows coding sequences previously annotated within the bin representative AGE with the strand on which the gene was found indicated by both color and arrow direction. The row with the red box indicates the strain that was the source of the bin representative sequence. Remaining rows are labeled with the source genome name and show the distribution of accessory element alignments against the bin representative AGE in blue. The intensity of color in each of the boxes corresponds to the percent nucleotide identity of the alignment according to the blue gradient in the legend on the right. The green box indicates AGE sequence that was not present in the assembled sequence of the PA103 strain, but for which alignments were found within the whole-genome sequence Illumina read set. Color intensity of the read-aligned portions corresponds to percent nucleotide identity of the alignment according to the green gradient in the legend at right. Vertical dashed lines show subelement borders. Lines dividing subelements smaller than 20 bp are not shown

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