Fig. 1
From: Ioncopy: an R Shiny app to call copy number alterations in targeted NGS data
Screenshot of the Ioncopy GUI. The left panel functions to upload the matrix of sequencing coverages (amplicons × samples) and to start the analysis. In the middle panel, the user chooses gene-wise or amplicon-wise analysis and a method to correct CNA p-values for multiple testing. The appearance of the overview heatmap can be modified using the lower part of the middle panel. The right panel functions as result area and offers download of tables including calculated copy numbers, significances and CNA calls