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Table 2 CDUR metric description

From: The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure

CDUR metric

Description

belowX

% sequences with fewer numbers of MMs than subject for motif X

repTr_below

% sequences with fewer non-synonymous transitions than subject

repTrFrac_belowX

% sequences with fewer nonsynonymous transitions:MMs

corXxY, corRepTrXxy, corRepTrFracXxY

correlation coefficient between MM X and Y

pXcondY, pXcondRepTrY, pXcondRepTrFracY

Bivariate conditional P-valueof MM X on Y

expectedX, repTr_expectedX, RepTrFrac_expectedX

Mean MMs, non-syn. transitions, and repTr:MMs in null dist. for X

observedX, repTr_observedX, repTrFrac_observedX

Total MMs, non-syn. transitions, and repTr:MMs in subject for X