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Fig. 2 | BMC Bioinformatics

Fig. 2

From: REHUNT: a reliable and open source package for restriction enzyme hunting

Fig. 2

Bad-character shift rule. N is the length of the input sequence and M is the length of the enzyme recognition sequence. Sequence (n) and Enzyme (m) represent the nucleotide at the n-th position in the input sequence and the nucleotide at the m-th position in the enzyme recognition sequence, respectively. a An enzyme recognition sequence is aligned from right to left: Sequence (6) = Enzyme (6), Sequence (5) = Enzyme (5), but Sequence (4) ≠ Enzyme (4). b The Enzyme window is moved and Enzyme (2) is aligned to Sequence (4)

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