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Fig. 2 | BMC Bioinformatics

Fig. 2

From: STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow

Fig. 2

Workflow of metatranscriptomic analysis integrated with metabolic network. a Raw reads from were assembled with a default STAble analysis. b Reconstructed transcripts were assigned to orthologous transcripts included in several metabolic pathways as annotated in KEGG database. A contingency table with KEGG reference genes binned with reconstructed transcripts is generated. c Metabolic model flux analysis to interpret gene expression using the method described in [13]

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BMC Bioinformatics

ISSN: 1471-2105

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