Table 4 List of all bacterial metabolic reactions identified in low methane yield animals
Abbreviation | Subsystem | Official Name |
|---|---|---|
ALATA_L | Alanine and Aspartate Metabolism | L-alanine transaminase |
THMDt2pp | Transport | thymidine transport in via proton symport (periplasm) |
THMDt2rpp | Transport | thymidine transport in via proton symport reversible (periplasm) |
NAt3pp | Inorganic Ion Transport and Metabolism | sodium transport out via proton antiport (cytoplasm to periplasm) |
VPAMTr | Valine, Leucine and Isoleucine Metabolism | Valine-pyruvate aminotransferase |
VALTA | Valine, Leucine and Isoleucine Metabolism | valine transaminase |
SUCDi | Oxidative Phosphorylation | succinate dehydrogenase (irreversible) |
GLUABUTt7pp | Transport | 4-aminobutyrate/glutamate antiport (periplasm) |
ABUTt2pp | Transport | 4-aminobutyrate transport in via proton symport (periplasm) |
GLYt4pp | Transport | glycine transport in via sodium symport (periplasm) |
GLUt2rpp | Transport | L-glutamate transport via proton symport reversible (periplasm) |
GLDBRAN2 | Glycolysis/Gluconeogenesis | glycogen debranching enzyme (bglycogen - > glycogen) |
GLYCLTt2rpp | Transport | glycolate transport via proton symport |
GLYCLTt4pp | Transport | glycolate transport via sodium symport (periplasm) |
ACt2rpp | Transport | acetate reversible transport via proton symport (periplasm) |
ACt4pp | Transport | Na+/Acetate symport (periplasm) |
ADK1 | Nucleotide Salvage Pathway | adenylate kinase |
PTAr | Pyruvate Metabolism | phosphotransacetylase |
ACKr | Pyruvate Metabolism | acetate kinase |
ACS | Pyruvate Metabolism | acetyl-CoA synthetase |
SERt2rpp | Transport | L-serine reversible transport via proton symport (periplasm) |
SERt4pp | Transport | L-serine via sodium symport (periplasm) |
GLCtex | Transport | glucose transport via diffusion (extracellular to periplasm) |
PRPPS | Histidine Metabolism | phosphoribosylpyrophosphate synthetase |
PPM | Alternate Carbon Metabolism | phosphopentomutase |
R15BPK | Alternate Carbon Metabolism | Ribose-1,5 bisphosphokinase |
R1PK | Alternate Carbon Metabolism | ribose 1-phosphokinase |
GLCtexi | Transport | D-glucose transport via diffusion (extracellular to periplasm) irreversible |
ADNt2pp | Transport | adenosine transport in via proton symport (periplasm) |
ADNt2rpp | Transport | adenosine transport in via proton symport reversible (periplasm) |
ASPt2pp | Transport | L-aspartate transport in via proton symport (periplasm) |
ASPt2rpp | Transport | L-aspartate transport in via proton symport (periplasm) reversible |
INDOLEt2pp | Transport | Indole transport via proton symport irreversible (periplasm) |
INDOLEt2rpp | Transport | Indole transport via proton symport reversible (periplasm) |
FBA | Glycolysis/Gluconeogenesis | fructose-bisphosphate aldolase |
PFK | Glycolysis/Gluconeogenesis | phosphofructokinase |
ICHORS | Cofactor and Prosthetic Group Biosynthesis | isochorismate synthase |
ICHORSi | Cofactor and Prosthetic Group Biosynthesis | Isochorismate Synthase |
HPYRI | Alternate Carbon Metabolism | hydroxypyruvate isomerase |
HPYRRx | Alternate Carbon Metabolism | Hydroxypyruvate reductase (NADH) |
TRSARr | Alternate Carbon Metabolism | tartronate semialdehyde reductase |
CYTDt2pp | Transport | cytidine transport in via proton symport (periplasm) |
CYTDt2rpp | Transport | cytidine transport in via proton symport reversible (periplasm) |
FRD2 | Citric Acid Cycle | fumarate reductase |
NADH17pp | Oxidative Phosphorylation | NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) |
EX_h(e) | Exchange | H+ exchange |
EX_fe3(e) | Exchange | Fe3+ exchange |
EX_fe2(e) | Exchange | Fe2+ exchange |
Htex | Transport | proton transport via diffusion (extracellular to periplasm) |
FEROpp | Inorganic Ion Transport and Metabolism | ferroxidase |
FE3tex | Transport | iron (III) transport via diffusion (extracellular to periplasm) |
FE2tex | Transport | iron (II) transport via diffusion (extracellular to periplasm) |
GLBRAN2 | Glycolysis/Gluconeogenesis | 4-alpha-glucan branching enzyme (glycogen - > bglycogen) |
EX_o2(e) | Exchange | O2 exchange |
EX_h2o(e) | Exchange | H2O exchange |
O2tex | Transport | oxygen transport via diffusion (extracellular to periplasm) |
H2Otex | Transport | H2O transport via diffusion (extracellular to periplasm) |
CRNDt2rpp | Transport | D-carnitine outward transport (H+ antiport) |
CRNt2rpp | Transport | L-carnitine outward transport (H+ antiport) |
CRNt8pp | Transport | L-carnitine/D-carnitine antiporter (periplasm) |
ALAt4pp | Transport | L-alanine transport in via sodium symport (periplasm) |