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Table 4 List of all bacterial metabolic reactions identified in low methane yield animals

From: STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow

Abbreviation Subsystem Official Name
ALATA_L Alanine and Aspartate Metabolism L-alanine transaminase
THMDt2pp Transport thymidine transport in via proton symport (periplasm)
THMDt2rpp Transport thymidine transport in via proton symport reversible (periplasm)
NAt3pp Inorganic Ion Transport and Metabolism sodium transport out via proton antiport (cytoplasm to periplasm)
VPAMTr Valine, Leucine and Isoleucine Metabolism Valine-pyruvate aminotransferase
VALTA Valine, Leucine and Isoleucine Metabolism valine transaminase
SUCDi Oxidative Phosphorylation succinate dehydrogenase (irreversible)
GLUABUTt7pp Transport 4-aminobutyrate/glutamate antiport (periplasm)
ABUTt2pp Transport 4-aminobutyrate transport in via proton symport (periplasm)
GLYt4pp Transport glycine transport in via sodium symport (periplasm)
GLUt2rpp Transport L-glutamate transport via proton symport reversible (periplasm)
GLDBRAN2 Glycolysis/Gluconeogenesis glycogen debranching enzyme (bglycogen - > glycogen)
GLYCLTt2rpp Transport glycolate transport via proton symport
GLYCLTt4pp Transport glycolate transport via sodium symport (periplasm)
ACt2rpp Transport acetate reversible transport via proton symport (periplasm)
ACt4pp Transport Na+/Acetate symport (periplasm)
ADK1 Nucleotide Salvage Pathway adenylate kinase
PTAr Pyruvate Metabolism phosphotransacetylase
ACKr Pyruvate Metabolism acetate kinase
ACS Pyruvate Metabolism acetyl-CoA synthetase
SERt2rpp Transport L-serine reversible transport via proton symport (periplasm)
SERt4pp Transport L-serine via sodium symport (periplasm)
GLCtex Transport glucose transport via diffusion (extracellular to periplasm)
PRPPS Histidine Metabolism phosphoribosylpyrophosphate synthetase
PPM Alternate Carbon Metabolism phosphopentomutase
R15BPK Alternate Carbon Metabolism Ribose-1,5 bisphosphokinase
R1PK Alternate Carbon Metabolism ribose 1-phosphokinase
GLCtexi Transport D-glucose transport via diffusion (extracellular to periplasm) irreversible
ADNt2pp Transport adenosine transport in via proton symport (periplasm)
ADNt2rpp Transport adenosine transport in via proton symport reversible (periplasm)
ASPt2pp Transport L-aspartate transport in via proton symport (periplasm)
ASPt2rpp Transport L-aspartate transport in via proton symport (periplasm) reversible
INDOLEt2pp Transport Indole transport via proton symport irreversible (periplasm)
INDOLEt2rpp Transport Indole transport via proton symport reversible (periplasm)
FBA Glycolysis/Gluconeogenesis fructose-bisphosphate aldolase
PFK Glycolysis/Gluconeogenesis phosphofructokinase
ICHORS Cofactor and Prosthetic Group Biosynthesis isochorismate synthase
ICHORSi Cofactor and Prosthetic Group Biosynthesis Isochorismate Synthase
HPYRI Alternate Carbon Metabolism hydroxypyruvate isomerase
HPYRRx Alternate Carbon Metabolism Hydroxypyruvate reductase (NADH)
TRSARr Alternate Carbon Metabolism tartronate semialdehyde reductase
CYTDt2pp Transport cytidine transport in via proton symport (periplasm)
CYTDt2rpp Transport cytidine transport in via proton symport reversible (periplasm)
FRD2 Citric Acid Cycle fumarate reductase
NADH17pp Oxidative Phosphorylation NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm)
EX_h(e) Exchange H+ exchange
EX_fe3(e) Exchange Fe3+ exchange
EX_fe2(e) Exchange Fe2+ exchange
Htex Transport proton transport via diffusion (extracellular to periplasm)
FEROpp Inorganic Ion Transport and Metabolism ferroxidase
FE3tex Transport iron (III) transport via diffusion (extracellular to periplasm)
FE2tex Transport iron (II) transport via diffusion (extracellular to periplasm)
GLBRAN2 Glycolysis/Gluconeogenesis 4-alpha-glucan branching enzyme (glycogen - > bglycogen)
EX_o2(e) Exchange O2 exchange
EX_h2o(e) Exchange H2O exchange
O2tex Transport oxygen transport via diffusion (extracellular to periplasm)
H2Otex Transport H2O transport via diffusion (extracellular to periplasm)
CRNDt2rpp Transport D-carnitine outward transport (H+ antiport)
CRNt2rpp Transport L-carnitine outward transport (H+ antiport)
CRNt8pp Transport L-carnitine/D-carnitine antiporter (periplasm)
ALAt4pp Transport L-alanine transport in via sodium symport (periplasm)