Table 1 Inference methods used to retrieve predictions on PPI from cancer tissues grouped by category
From: INBIA: a boosting methodology for proteomic network inference
Category | Method name |
|---|---|
Correlation | Spearman correlation [SPEARMAN] |
| Â | Pearson correlation [PEARSON] |
| Â | TOM Similarity [WGCNA] |
Partial Correlation | Simple partial correlation [SPC] |
| Â | GeneNet shrunken [GENENET] |
| Â | Graphical lasso [GLASSO] |
Regression | Partial least squares regression [PLS] |
| Â | Ridge regression [RIDGE] |
| Â | Lasso regression [LASSO] |
| Â | Elastic net regression [ELASTICNET] |
Mutual Information | ARACNE additive [ARACNEA] |
| Â | ARACNE multiplicative [ARACNEM] |
| Â | Context likelihood of relatedness [CLR] |
| Â | Maximum relevance minimum redundancy [MRNET] |