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Table 1 Runtime of SAMSA2 components vs SAMSA (Days-Hours:Minutes:Seconds)

From: SAMSA2: a standalone metatranscriptome analysis pipeline

 

SAMSA2

SAMSA2

SAMSA2

SAMSA2

SAMSA2

SAMSA 1.0

Pre-processing

RefSeq

SEED subsystems

CAZy

Total runtime

Total runtimea

Average

0–0:21:10

0–5:24:18

0–0:26:16

0–0:02:49

0–6:14:21

1–19:44:00

  1. aBest case scenario: Public immediately after completion (highest priority)
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BMC Bioinformatics

ISSN: 1471-2105

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