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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Core Hunter 3: flexible core subset selection

Fig. 3

Simultaneous maximization of entry-to-nearest-entry distance (E-NE) and expected heterozygosity (HE). These Pareto front approximations for Core Hunter 3 were obtained by sampling cores with varying weights α1[ 0,1] and α2=1−α1 assigned to the E-NE and HE measures, respectively, with a step size of 0.05. The quality of the cores constructed by CH3 is compared with those obtained by GDOpt and SimEli, in terms of both objective functions. All reported values are averages of 10 independently sampled cores with the same settings. The rice dataset is excluded here because expected heterozygosity can only be evaluated for genotypic data

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