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Table 3 Entity frequency and grounding accuracy for 300 entities, with and without FamPlex

From: FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining

 

No FamPlex

With FamPlex

 

#

Entity %

# Corr.

% Corr.

#

Entity %

# Corr.

% Corr.

Protein/gene

169

56.3

133

78.7 ±3.1

172

57.3

154

89.5 ±2.3

Family/complex

53

17.7

8

15.1 ±4.9

52

17.3

37

71.2 ±6.3

Small molecule

33

11.0

18

54.5 ± 8.7

26

8.7

14

53.8 ± 9.8

Biological process

28

9.3

24

85.7 ± 6.6

28

9.3

28

100.0 ± 0.0

Other/unknown

16

5.3

0

0.0 ± 0.0

21

7.0

0

0.0 ± 0.0

microRNA

1

0.3

0

0.0 ± 0.0

1

0.3

0

0.0 ± 0.0

  1. Standard error was calculated using the formula \(\sqrt {(k/n)(1-k/n)/n}\) where k is the number of samples in the given category and n is the total number of samples
  2. Row 1: significant with p<0.01
  3. Row 2: significant with p<10−8
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BMC Bioinformatics

ISSN: 1471-2105

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