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Table 6 Top 10 ranked genes of each method

From: MGOGP: a gene module-based heuristic algorithm for cancer-related gene prioritization

 

MGOGP

Endeavor

GeneFriends

PINTA

ToppGene

ToppNet

Top 10 gene

CCNB1IP1

CCNE2

NEK1

NRP1

CDC25C

VIM

PTEN

VEGFB

MCM2

PTGS2

SNRPF

BUB3

MSH2

SSBP1

RFC4

EZH2

CENPF

BLMH

KIF20B

BAZ1A

LURAP1L

PVRL2

CYFIP1

FAM120A

IL13RA1

MYO1B

BCL9L

NQO1

RIN2

SDC4

MGP

EEF1A1

TPT1

RPS6

RPL3

RPS27

ACTB

SCGB2A2

RPL11

PIP

RAD51

APEX1

SIRT2

NOC2L

NEDD1

TERT

EPN3

PPARGC1A

NBN

ATR

APP

ELAVL1

NTRK1

RPA1

XPO1

EED

CUL3

BARD1

HSP90AA1

NXF1

Known disease genes fall in the top 10 gene

PTEN

VEGFB

MCM2

MSH2

EZH2

NQO1

SCGB2A2

PIP

RAD5

TERT

NBN

ATR

BARD1

  1. In Table 6, each method is run with default parameter settings and use same training genes. Top 10 gene means the top 10 genes prioritized by each method and Known disease genes fall in the top 10 gene means genes supplied for training each method falls in the top 10 genes. Detail statistic results are shown in Fig. 7