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Table 1 Summary of datasets used in the evaluation of the eight network methods

From: Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data

Datasets ESC HSC Sim1 Sim2
#Sample (S) 89 3934 100 1000
#Gene (N) 96 33 100 10
Methods Fluidigm qPCR Fluidigm qPCR GNW in silico GNW in silico
Source Mouse Mouse E. coli E. coli
Reference (Ref) STRING PPI STRING PPI GNW GNW
#Edges in Ref 409 126 263 9
Citation [26] [38] [40, 47] [40, 47]