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Table 1 Summary of datasets used in the evaluation of the eight network methods

From: Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data

Datasets

ESC

HSC

Sim1

Sim2

#Sample (S)

89

3934

100

1000

#Gene (N)

96

33

100

10

Methods

Fluidigm qPCR

Fluidigm qPCR

GNW in silico

GNW in silico

Source

Mouse

Mouse

E. coli

E. coli

Reference (Ref)

STRING PPI

STRING PPI

GNW

GNW

#Edges in Ref

409

126

263

9

Citation

[26]

[38]

[40, 47]

[40, 47]