From: DrImpute: imputing dropout events in single cell RNA sequencing data
Dataset | k | # cells | Standard | Cell Label Definition | UMI | Ref |
---|---|---|---|---|---|---|
Pollen | 11 | 301 | gold | human cell lines | No | [8] |
Deng | 10 | 286 | bronze | Stages of mouse preimplantation development | No | [6] |
Usoskin | 4 | 622 | silver | Clusters of mouse lumbar DRG (dorsal root ganglion) | No | [35] |
Blakeley | 3 | 30 | gold | Human pluripotent epiblast cells, extraembryonic trophectoderm cells and primitive endoderm cells | No | [32] |
Treutlein | 8 | 405 | bronze | Cell populations from direct reprogramming from fibroblast to neuron (MEF, day 2, 5, and 22) | No | [36] |
Zheng | 10 | 94,655 | gold | Cell populations from human immune system | Yes | [33] |
Hrvatin | 8 | 48,266 | silver | Cell populations from mouse visual cortex | Yes | [34] |
Scialdone | 4 | 1205 | bronze | Stages of mouse mesodermal development | No | [37] |
Petropoulos | 5 | 1529 | bronze | Stages of human preimplantation development | No | [38] |