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Table 4 Top scoring pairs of genes under TSP and AUCTSP

From: AUCTSP: an improved biomarker gene pair class predictor

   

Score

Dataset

Method

Gene pair

TSP

AUCTSP

OVARIAN

TSP

[PKM2, OVGP1]

0.900

0.675

 

AUCTSP

[IRS1, OVGP1]

0.833

0.826

LEUKEMIA

TSP

[SPTAN1, CD33]

0.979

0.938

 

TSP

[ARHGAP45, ZYX]

0.979

0.770

 

TSP

[PCDHGC3, ZYX]

0.979

0.855

 

AUCTSP

[SPTAN1, CD33]

0.979

0.938

BREAST-ER

TSP

[MUC2, ESR1]

0.918

0.812

 

TSP

[JAK3, ESR1]

0.918

0.791

 

TSP

[GNB3, ESR1]

0.918

0.804

 

TSP

[HARS2, ESR1]

0.918

0.834

 

TSP

[ERF, ESR1]

0.918

0.822

 

AUCTSP

[CTSC, ESR1]

0.878

0.891

BREAST-LN

TSP

[BP1CR, GYPB]

0.838

0.675

 

AUCTSP

[BP1CR, KRT31]

0.717

0.765

 

TSP

[FABP3, ACVR1B]b

0.716

0.531

 

AUCTSP

[GYPB, ACVR1B]b

0.633

0.615

DLBCL

TSP

[PDE4B, GPR12]

0.596

0.414

 

AUCTSP

[POLR2J, PTGER4]

0.341

0.46

DLBCL-FL

TSP

[YWHAZ, SNRPB]

0.983

0.727

 

AUCTSP

[FCGR1A, NEO1]

0.759

0.83

COLON

TSP

[VIP, DARS]

0.879

0.637

 

AUCTSP

[MYH9, HNRNPA1]

0.759

0.724

PROSTATE

TSP

[CFD, ENO1]

0.901

0.693

 

AUCTSP

[CFD, NUMB]

0.882

0.883

  1. aindicates the selected TSP gene pair by [7] to break the tie for pairs with equal TSP scores
  2. bindicates the selected pair of genes by TSP and AUCTSP after removing the genetically modified gene BP1CR (see [32, 33]) from the dataset