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Fig. 3 | BMC Bioinformatics

Fig. 3

From: ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

Fig. 3

Chromosome-scale ARKS scaffolding of a NA12878 10xG Supernova assembly. Scaftigs from the NG85 scaffolds of the baseline NA12878 Supernova assembly (blue) and the assembly following ARKS scaffolding (−k100 -j0.5 -c5 -e30000 -z3000 -m50–6000 -r0.05 -a0.5) (green) were aligned to GRCh38 using BWA mem [18]. The ideogram was generated using the R package chromPlot [25]. For each assembly, alternating shades represent different scaffolds. Red bands on the reference chromosomes denote gaps in the reference assembly

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