Fig. 4
From: ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
Benchmarking wall clock time for ARCS and ARKS. The wall clock benchmarking is shown for the most contiguous assemblies from scaffolding the NA12878 Supernova assembly with ARCS (−a0.5 -s98 -c5 -m50–6000 -e30000 -z3000) and ARKS (−a0.5 -k100 -t8 -c5 -j0.5 -m50–6000 -e30000 -z3000). For ARCS, the linked reads were partitioned into eight sets, and aligned to the draft assembly in parallel. The wall clock time for the bottleneck read alignment is shown. ARKS was run with eight threads, while only the alignment step of ARCS was run with eight threads, as threading is not implemented in ARCS