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Table 1 New organelle editome entries added to the PREPACT reference library

From: Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0

Organelle Species

GenBank accession

RNA editing study

Editing sites

14 new chloroplast editomes

Aegilops tauschii

KJ614412

[41]

49

Amborella trichopoda

NC_005086

[40]

156

Apopellia endiviifolia

NC_019628

[49]

54

Cocos nucifera

NC_022417

[42]

98

Cucumis sativus

NC_007144

[43]

65

Equisetum hyemale

NC_020146

[50]

0

Ginkgo biloba

KP099648

[48]

263

Gossypium hirsutum

NC_007944

[44]

69

Ophioglossum californicum

NC_020147

[51]

232

Phalaenopsis aphrodite

NC_007499

[45]

47

Psilotum nudum

KC117179

[51]

30

Selaginella uncinata

AB197035

[36]

3488

Spirodela polyrhiza

NC_015891

[46]

74

Vigna radiata

AP014691

[47]

51

6 new mitochondrial editomes

Acrasis kona

NC_026286

[26]

2

Amborella trichopoda

KF754799

KF754800

KF754801

KF754802

KF754803

[54]

824

Cocos nucifera

NC_031696

[55]

794

Liriodendron tulipifera

KC821969

[53]

827

Ophioglossum californicum

NC_030900

[52]

861

Psilotum nudum

KX171638

KX171639

[52]

731

  1. NCBI-curated accessions (NC_) have been used preferentially when RNA editing information was retained. Numbers of editing sites (last column) indicate “applied” events in the RNA editing annotation of the PREPACT references. Numbers are occasionally higher than in the respective studies since duplicate annotations had to be used where multiple identical gene copies exist, mainly for those located in the chloroplast IR regions. The Amborella trichopoda and Psilotum nudum mitochondrial editome references were assembled from the separate mt chromosome sequence entries in these species. The resulting number of editome references now available in PREPACT 3.0 totals 52 (27 chloroplast and 25 mitochondrial entries)