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Table 1 CEDAR OnDemand Qualified Ontologies for each NCBI BioSample Field

From: CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata

Field names Qualified ontologies
Sample Name Ontology for Biomedical Investigations (OBI), National Cancer Institute Thesaurus (NCIT)
Organism National Cancer Institute Thesaurus (NCIT)
Isolate National Cancer Institute Thesaurus (NCIT)
Age National Cancer Institute Thesaurus (NCIT)
Biomaterial Provider National Cancer Institute Thesaurus (NCIT)
Tissue Uber Anatomy Ontology (UBERON), Ontology for Biomedical Investigations (OBI), National Cancer Institute Thesaurus (NCIT), Cell Ontology (CL), Cell Line Ontology (CLO)
Cell line Cell Line Ontology (CLO), Ontology for Biomedical Investigations (OBI), National Cancer Institute Thesaurus (NCIT)
Cell subtype Cell Ontology (CL), Gene Ontology (GO), National Cancer Institute Thesaurus (NCIT)
Cell type Cell Ontology (CL), Cell Line Ontology (CLO), National Cancer Institute Thesaurus (NCIT)
Culture Collection National Cancer Institute Thesaurus (NCIT)
Development Stage Gene Ontology (GO), National Cancer Institute Thesaurus (NCIT)
Disease Human Disease Ontology (DOID), Cell Line Ontology (CLO), Ontology for Biomedical Investigations (OBI), National Cancer Institute Thesaurus (NCIT)
Disease Stage Human Disease Ontology (DOID), Cell Line Ontology (CLO), Ontology for Biomedical Investigations (OBI), National Cancer Institute Thesaurus (NCIT)
Ethnicity National Cancer Institute Thesaurus (NCIT)
Health state National Cancer Institute Thesaurus (NCIT)
Karyotype National Cancer Institute Thesaurus (NCIT)
Phenotype Ontology for Biomedical Investigations (OBI), National Cancer Institute Thesaurus (NCIT)
Population Ontology for Biomedical Investigations (OBI)
Race National Cancer Institute Thesaurus (NCIT)
Sample type National Cancer Institute Thesaurus (NCIT)
Treatment Ontology for Biomedical Investigations (OBI), National Cancer Institute Thesaurus (NCIT)
  1. Field Names column lists the Human Sample attributes of NCBI BioSample. Qualified Ontologies are the ontologies which CEDAR OnDemand algorithm recommends