Table 1 Classification of inversions and their solution: assuming the short read sequencing insert size is 500 bp
From: npInv: accurate detection and genotyping of inversions using long read sub-alignment
Class | Inverted repeat size(bp) | Inversion size(bp) | Type of inversion | Efficient detection method | Number of inversions |
|---|---|---|---|---|---|
Short | [0,500]’ | [2,INF) | NHEJ/FoSTeS, NAHR | Pair end mapping/Local assembly | 52 |
Median | (500,7000] | (1000,INF) | NAHR | Split long read | 23 |
Long | (7000,INF) | (14000,INF) | NAHR | Microscope, other | 12 |