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Table 10 Peak of RAM usage in Megabytes of the tools on simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg.

HapCHAT

HapCol

WhatsHap

WhatsHap

HapCUT2

ReFHap

ProbHap

FastHare

Cov.

  

cov. 15x

cov. 20x

    

25

1378

2180

930

5161

3262

3007

4284

3007

30

1667

4187

930

6117

3266

3008

5320

3008

35

1984

2134

931

6558

3270

3008

5709

3008

40

2315

2186

932

6780

3272

3009

-

3009

45

2665

5037

932

7043

3276

3010

-

3010

50

3180

5223

932

7058

3279

3010

-

3010

55

3591

5483

996

7212

3282

3011

-

3011

60

4009

2374

1039

7294

3286

3011

-

3011

  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare
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BMC Bioinformatics

ISSN: 1471-2105

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