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Table 11 Switch error percentage on datasets of NA12878

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Chrom. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
    cov. 15x cov. 20x     
1 1.929 - 1.926 1.924 1.920 - - 2.191
2 0.038 - 0.050 0.035 0.030 - - 0.374
3 0.044 - 0.045 0.039 0.031 - - 0.381
4 2.042 - 2.052 2.048 2.033 - - 2.237
5 1.829 - 1.828 1.824 1.825 - - 1.998
6 1.991 - 1.990 1.991 1.983 - - 2.205
7 0.659 - 0.669 0.666 0.660 - - 0.924
8 1.743 - 1.746 1.748 1.749 - - 1.992
9 1.966 - 1.965 1.966 1.940 2.140 - 2.187
10 0.949 - 0.949 0.948 0.939 1.171 - 1.232
11 2.092 - 2.101 2.101 2.081 2.282 - 2.325
12 0.041 - 0.055 0.048 0.043 0.319 - 0.405
13 0.051 - 0.036 0.049 0.029 0.285 - 0.349
14 0.034 - 0.042 0.039 0.032 0.347 - 0.421
15 0.055 0.331 0.069 0.065 0.043 0.358 - 0.427
16 0.022 0.289 0.022 0.029 0.027 0.322 - 0.420
17 0.055 0.277 0.071 0.067 0.047 0.337 - 0.426
18 1.895 - 1.879 1.876 1.889 2.072 - 2.122
19 2.629 - 2.642 2.644 2.616 2.807 - 2.914
20 0.043 0.277 0.046 0.043 0.043 0.412 - 0.451
21 0.033 - 0.044 0.041 0.030 0.364 - 0.408
22 2.102 2.323 2.106 2.114 2.068 2.378 - 2.452
  1. Each row corresponds to a chromosome. The dataset consists of all reads aligned to the chromosome. We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (lowest value) for each dataset is boldfaced