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Table 11 Switch error percentage on datasets of NA12878

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Chrom.

HapCHAT

HapCol

WhatsHap

WhatsHap

HapCUT2

ReFHap

ProbHap

FastHare

   

cov. 15x

cov. 20x

    

1

1.929

-

1.926

1.924

1.920

-

-

2.191

2

0.038

-

0.050

0.035

0.030

-

-

0.374

3

0.044

-

0.045

0.039

0.031

-

-

0.381

4

2.042

-

2.052

2.048

2.033

-

-

2.237

5

1.829

-

1.828

1.824

1.825

-

-

1.998

6

1.991

-

1.990

1.991

1.983

-

-

2.205

7

0.659

-

0.669

0.666

0.660

-

-

0.924

8

1.743

-

1.746

1.748

1.749

-

-

1.992

9

1.966

-

1.965

1.966

1.940

2.140

-

2.187

10

0.949

-

0.949

0.948

0.939

1.171

-

1.232

11

2.092

-

2.101

2.101

2.081

2.282

-

2.325

12

0.041

-

0.055

0.048

0.043

0.319

-

0.405

13

0.051

-

0.036

0.049

0.029

0.285

-

0.349

14

0.034

-

0.042

0.039

0.032

0.347

-

0.421

15

0.055

0.331

0.069

0.065

0.043

0.358

-

0.427

16

0.022

0.289

0.022

0.029

0.027

0.322

-

0.420

17

0.055

0.277

0.071

0.067

0.047

0.337

-

0.426

18

1.895

-

1.879

1.876

1.889

2.072

-

2.122

19

2.629

-

2.642

2.644

2.616

2.807

-

2.914

20

0.043

0.277

0.046

0.043

0.043

0.412

-

0.451

21

0.033

-

0.044

0.041

0.030

0.364

-

0.408

22

2.102

2.323

2.106

2.114

2.068

2.378

-

2.452

  1. Each row corresponds to a chromosome. The dataset consists of all reads aligned to the chromosome. We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (lowest value) for each dataset is boldfaced