Skip to main content

Table 17 Comparison of the switch error positions on the Ashkenazim datasets of Chromosome 1 obtained with HapCHAT

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Ashkenazim Cov. 25 Cov. 30 Cov. 35 Cov. 40 Cov. 45 Cov. 50 Cov. 55
Cov. 30 75/2/4       
Cov. 35 72/4/7 74/2/3      
Cov. 40 71/6/8 74/4/4 75/2/1     
Cov. 45 71/6/8 73/4/4 75/2/1 77/0/0    
Cov. 50 70/7/9 72/5/5 73/4/3 75/2/2 75/2/2   
Cov. 55 71/6/8 73/4/4 73/4/3 75/2/2 75/2/2 75/2/2  
Cov. 60 71/7/8 73/5/4 73/5/3 75/3/2 75/3/2 75/3/2 76/2/1
  1. For each pair of datasets having different coverages, we report the number of positions in which a switch error occurred as follows: those in common between the two datasets, those only found in the dataset of the row, and those only found the dataset of the column, respectively