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Table 17 Comparison of the switch error positions on the Ashkenazim datasets of Chromosome 1 obtained with HapCHAT

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Ashkenazim

Cov. 25

Cov. 30

Cov. 35

Cov. 40

Cov. 45

Cov. 50

Cov. 55

Cov. 30

75/2/4

      

Cov. 35

72/4/7

74/2/3

     

Cov. 40

71/6/8

74/4/4

75/2/1

    

Cov. 45

71/6/8

73/4/4

75/2/1

77/0/0

   

Cov. 50

70/7/9

72/5/5

73/4/3

75/2/2

75/2/2

  

Cov. 55

71/6/8

73/4/4

73/4/3

75/2/2

75/2/2

75/2/2

 

Cov. 60

71/7/8

73/5/4

73/5/3

75/3/2

75/3/2

75/3/2

76/2/1

  1. For each pair of datasets having different coverages, we report the number of positions in which a switch error occurred as follows: those in common between the two datasets, those only found in the dataset of the row, and those only found the dataset of the column, respectively
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BMC Bioinformatics

ISSN: 1471-2105

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