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Table 3 QAN50 on the real Ashkenazim dataset, Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
Cov.    cov. 15x cov. 20x     
25 79452 76856 79515 79515 78192 48097 45492 45445
30 80662 80150 80426 80426 80150 52713 50806 49308
35 81842 81464 81757 81757 81464 54182 - 51766
40 83968 82758 83802 83802 83263 57589 - 55014
45 87267 86001 87267 87267 86001 59161 - 57008
50 89669 89738 89858 89858 89306 60380 - 59447
55 91434 91434 91224 91224 90718 62652 - 59582
60 94913 92938 95818 95818 92565 64710 - 62655
  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (highest value) for each dataset is boldfaced