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Table 4 Time in seconds of the tools on real Ashkenazim datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg.

HapCHAT

HapCol

WhatsHap

WhatsHap

HapCUT2

ReFHap

ProbHap

FastHare

Cov.

  

cov. 15x

cov. 20x

    

25

591

39456

1115

9278

1563

80

43573

3

30

1292

46564

1031

10753

1596

196

72696

4

35

2193

50071

1122

11959

1888

308

-

4

40

3095

50301

1247

12570

2160

499

-

5

45

3888

51570

1308

12735

2388

822

-

6

50

4579

53030

1395

12996

2731

1192

-

8

55

5103

54012

1534

13252

2983

1777

-

9

60

5550

53496

1605

13469

3216

2493

-

13

  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare