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Table 4 Time in seconds of the tools on real Ashkenazim datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
Cov.    cov. 15x cov. 20x     
25 591 39456 1115 9278 1563 80 43573 3
30 1292 46564 1031 10753 1596 196 72696 4
35 2193 50071 1122 11959 1888 308 - 4
40 3095 50301 1247 12570 2160 499 - 5
45 3888 51570 1308 12735 2388 822 - 6
50 4579 53030 1395 12996 2731 1192 - 8
55 5103 54012 1534 13252 2983 1777 - 9
60 5550 53496 1605 13469 3216 2493 - 13
  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare