Skip to main content

Table 5 Peak of RAM usage in Megabytes of the tools on real Ashkenazim datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg.

HapCHAT

HapCol

WhatsHap

WhatsHap

HapCUT2

ReFHap

ProbHap

FastHare

Cov.

  

cov. 15x

cov. 20x

    

25

1370

2263

930

5510

3266

3005

4693

3005

30

1661

2562

931

6195

3270

3005

5355

3005

35

1966

2908

931

6513

3276

3005

-

3005

40

2291

3231

931

6483

3279

3005

-

3005

45

2636

3190

952

6937

3283

3005

-

3005

50

3158

3286

1007

7144

3287

3005

-

3005

55

3549

3479

1042

7229

3292

3005

-

3005

60

3968

5412

1073

7430

3296

3005

-

3005

  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us